EnsDeconv (Ensemble Deconvolution) uses ensemble learning to robustly estimate cellular fractions from bulk omics.
Installation
devtools::install_github("randel/EnsDeconv")
Reference
Cai, M., Yue, M., Chen, T., Liu, J., Forno, E., Lu, X., Billiar, T., Celedón, J., Mckennan, C., Chen, W., Wang, J., 2022. Robust and accurate estimation of cellular fraction from tissue omics data via ensemble deconvolution. Bioinformatics 38, 3004–3010. 10.1093/bioinformatics/btac279